[BioC] Affymetrix Tiling arrays

[Benilton Carvalho]

the fix should appear later today at:

http://www.bioconductor.org/packages/2.0/bioc/html/ 
makePlatformDesign.html

v 0.99.25

b

On Apr 4, 2007, at 1:28 PM, Alessandro Ferrantini wrote:

> Dear Benilton,
>
> Thanks a lot for your suggestion. I've installed R version 2.5 and
> makePlatformDesign and oligo packages. I've tried the following:
>
>
>
>> makePDpackage 
>> ("Hs35b_M01R_v01_NCBIv35.bpmap",type="tiling",genomebuild="hg15")
>
>
>
> but I got an error:
>
>
>
> affymetrix tiling
>
> Error in makePDpackage("Hs35b_M01R_v01_NCBIv35.bpmap", type =  
> "tiling",  :
>
>         could not find function "cleanPlatformName"
>
>
>
> Any ideas? Here below the sessionInfo.
>
> Thank you,
>
> Alessandro
>
>
>
>
>
>
>
>> sessionInfo()
>
> R version 2.5.0 alpha (2007-04-01 r41004)
>
> i686-pc-linux-gnu
>
>
>
> locale:
>
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US 
> .UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US. 
> UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8 
> ;LC_IDENTIFICATION=C
>
>
>
> attached base packages:
>
> [1] "splines"   "tools"     "stats"     "graphics"  "grDevices"  
> "utils"
>
> [7] "datasets"  "methods"   "base"
>
>
>
> other attached packages:
>
>    makePlatformDesign                 oligo BufferedMatrixMethods
>
>             "0.99.24"             "0.99.96"               "0.1.1"
>
>        BufferedMatrix               RSQLite                   DBI
>
>              "0.1.29"               "0.5-3"               "0.2-1"
>
>               Biobase                affyio
>
>             "1.13.47"               "1.3.3"
>
>
>
>
>
> ______________________________________________________________________ 
> ______________
> The fish are biting.
>
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