[BioC] using nlme correlation structures in limma?

Jacob Michaelson jjmichael at comcast.net
Thu May 26 04:51:52 CEST 2005


Do any of the BioC demi-gods know how difficult it would be to use  
nlme's correlation structures:

corAR1
autoregressive process of order 1.
corARMA
autoregressive moving average process, with arbitrary orders for the  
autoregressive and moving average components.
corCAR1
continuous autoregressive process (AR(1) process for a continuous  
time covariate).
corCompSymm
compound symmetry structure corresponding to a constant correlation.

...in limma's lmFit as the "correlation=" argument?

Thanks in advance,

Jake



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