[BioC] Trouble with affy version 1.2.1

[Laurent Gautier]

The use of the 'devel' version of the package Biobase should keep R
happy.

Let us know if it not the case.


Hopin' it helps,



Laurent





On Wed, Sep 04, 2002 at 05:17:38PM -0400, Isaac Neuhaus wrote:
> I am running R 1.5.1 and I have installed the affy package version
> 1.2.1. When I start R and select library affy I get the following error.
> Any help?
> 
> Isaac
> 
> P.S. I have installed HDF5 and rhdf5.
> ---------------------------------------------------------------------------------------------
> 
> > library(affy)
> Loading required package: Biobase
> Loading required package: methods
> Expanding the signature to include omitted arguments
> in definition: j = "missing"
> 
> Attaching package `Biobase':
> 
> 
>         The following object(s) are masked from package:base :
> 
>          split
> 
> *************
> affy: development version (...this is usable...)
> *************
> demo(affy.tour) will eventually work and give an overview...
> *************
> If you have tkWidgets and rhdf5 installed, try
> expresso(widget=T, hdf5=T)
>  for a real thrill...
> Loading required package: eda
> -->detecting normalization methods from naming convention
> -->detecting expression value methods from naming convention
> -->detecting background correction methods from naming convention
> -->initCdf
> -->initCel
> -->initCel.container
> Loading required package: rhdf5
> 
> Attaching package `rhdf5':
> 
> 
>         The following object(s) are masked from package:base :
> 
>          is.finite is.matrix
> 
> -->initPPSet
> -->initPPSet.container
> -->initPlob
> Error in setMethod("abstract", "Plob", function(object)
> abstract(object@description),  :
>         No existing definition for function "abstract"
> Error in library(affy) : .First.lib failed
> 
> 
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